Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs2403598 | chr11:12388984 | A/C | 3.78E-6 | 405 | 5.77 | 17.6 | 16.35 | KM Plot |
| HNSC | rs2413662 | chr22:42260971 | C/G | 6.89E-5 | 405 | 16.2 | 18.17 | 6.67 | KM Plot |
| HNSC | rs2425046 | chr20:33871661 | A/G | 7.33E-7 | 412 | 16.27 | 16.97 | 5.72 | KM Plot |
| HNSC | rs2425048 | chr20:33872723 | C/T | 3.39E-5 | 411 | 16.27 | 16.97 | 4.2 | KM Plot |
| HNSC | rs2473512 | chr6:139421208 | G/A | 4.35E-13 | 410 | 16.47 | 15.07 | 2.17 | KM Plot |
| HNSC | rs2487265 | chr1:213083016 | T/C | 2.4E-5 | 410 | 16.07 | 20.2 | 5.03 | KM Plot |
| HNSC | rs2533907 | chr7:76215668 | C/T | 1.11E-10 | 410 | 16.37 | 14.77 | 3.95 | KM Plot |
| HNSC | rs2578670 | chr3:45573466 | A/C | 1.97E-5 | 412 | 13.07 | 16.35 | 18.6 | KM Plot |
| HNSC | rs2644550 | chr1:213082679 | C/G | 2.4E-5 | 410 | 16.07 | 20.2 | 5.03 | KM Plot |
| HNSC | rs2792559 | chr1:212965149 | C/A | 4.03E-5 | 411 | 16.07 | 18.67 | 5.03 | KM Plot |
| HNSC | rs28715577 | chr2:46966531 | G/A | 3.38E-8 | 407 | 16.92 | 16.17 | 4.03 | KM Plot |
| HNSC | rs2940085 | chr1:212973330 | T/C | 1.45E-5 | 411 | 16.07 | 18.67 | 5.03 | KM Plot |
| HNSC | rs3010524 | chr6:48606398 | A/G | 9.98E-6 | 409 | 8.4 | 15 | 17.07 | KM Plot |
| HNSC | rs302562 | chr6:39648685 | C/T | 7.9E-6 | 412 | 11.7 | 16.97 | 16.23 | KM Plot |
| HNSC | rs3049283 | chr1:146888484 | TTTG/T | 3.05E-6 | 411 | 17.07 | 14.1 | 3.6 | KM Plot |